Coding & Bioinformatics
Dr. Bonham is an enthusiatic programmer and data scientist.
Github Repositories
| Repository | Description |
|---|---|
| rust_quma | An implementation of the quma module from Pyllelic in Rust |
| quickapi | A generic quick API for single purpose python APIs |
| biochemistry-protocols | Biochemistry and other science protocols to facilitate collaborative methods development. |
| IPEDS_streamlit | |
| langmuir_streamlit | |
| mamba-how-to | Using Mamba-forge for Python environment management |
| dash-template | Cookiecutter template for a Plotly Dash webapp with modern structure and tooling. |
| bio-falsehoods | Web app to dispel common biology falsehoods |
| pyllelic-web | Web frontend for pyllelic bisulfite DNA analysis. |
| bonhamcode.com | Source code for BonhamCode.com |
| pyLIDAR | python scripts to interact with the LD06 LIDAR |
| scholar-update | Scripts for processing google scholar citation data. |
| pyfitnesspal | A quick streamlit app to chart weight loss via MyFitnessPal. |
| msu-chairpay | Quick streamlit dashboard to calculate alternative chair pay. |
| pyminecraft | Minecraft tools (server management, statistics tracking, etc) in Python |
| SACMES | Software for the Analysis and Continuous Monitoring of Electrochemical Systems. |
| msu-che-enrollment | An enrollment dashboard for MSU Denver Chemistry & Biochemistry |
| pyllelic | pyllelic: a tool for detection of allele-specific methylation variation in bisulfite DNA sequencing. |
| msu-covid-tracker | A web app of daily covid cases at MSU Denver. |
| pychemistry | A collection of python scripts for chemistry and biochemistry |
| academia-admin-automation | Miscellaneous scripts to automate administrative tasks in academia |
| fealden | Tool for generating optimized nucleic acid biosensor sequences |
| SWVAnyPeakFinder | GUI application for resolving peak heights in square-wave voltammetry datafiles. |